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Gresing, Lennart J.; Radon, Patricia; Friedrich, Ralf P.; Zahn, Diana; Raasch, Martin; Mosig, Alexander S.; Dutz, Silvio; Alexiou, Christoph; Wiekhorst, Frank; Hochhaus, Andreas; Clement, Joachim H.
Negatively charged magnetic nanoparticles pass the blood-placenta barrier under continuous flow conditions in a time-dependent manner. - In: Journal of magnetism and magnetic materials, ISSN 1873-4766, Volume 521 (2021), part 2, 167535

The transfer of substances via the blood-placenta barrier is tightly regulated and critical for the fetus and the expecting mother. In case of necessary medical interventions during pregnancy a comprehensive knowledge about the interaction of the drugs with this barrier is indispensable. Therefore well-engineered test systems are needed and valuable transport systems are helpful. We developed an in vitro microfluidic blood-placenta barrier system consisting of the human trophoblast cell line BeWo and human primary placental pericytes. The integrity and stability of the model was verified by a permeability assay and immunocytochemistry. As potential drug carriers magnetic nanoparticles with various coatings were applied and their ability to pass the barrier was quantified by magnetic particle spectroscopy. We could demonstrate that up to 4% of negatively charged nanoparticles pass the barrier in a time-dependent manner.



https://doi.org/10.1016/j.jmmm.2020.167535
Seeland, Marco; Mäder, Patrick
Multi-view classification with convolutional neural networks. - In: PLOS ONE, ISSN 1932-6203, Bd. 16 (2021), 1, e0245230, insges. 17 S.

https://doi.org/10.1371/journal.pone.0245230
Dunker, Susanne; Motivans, Elena; Rakosy, Demetra; Boho, David; Mäder, Patrick; Hornick, Thomas; Knight, Tiffany M.
Pollen analysis using multispectral imaging flow cytometry and deep learning. - In: The new phytologist, ISSN 1469-8137, Bd. 229 (2021), 1, S. 593-606

Pollen identification and quantification are crucial but challenging tasks in addressing a variety of evolutionary and ecological questions (pollination, paleobotany), but also for other fields of research (e.g. allergology, honey analysis or forensics). Researchers are exploring alternative methods to automate these tasks but, for several reasons, manual microscopy is still the gold standard. In this study, we present a new method for pollen analysis using multispectral imaging flow cytometry in combination with deep learning. We demonstrate that our method allows fast measurement while delivering high accuracy pollen identification. A dataset of 426 876 images depicting pollen from 35 plant species was used to train a convolutional neural network classifier. We found the best-performing classifier to yield a species-averaged accuracy of 96%. Even species that are difficult to differentiate using microscopy could be clearly separated. Our approach also allows a detailed determination of morphological pollen traits, such as size, symmetry or structure. Our phylogenetic analyses suggest phylogenetic conservatism in some of these traits. Given a comprehensive pollen reference database, we provide a powerful tool to be used in any pollen study with a need for rapid and accurate species identification, pollen grain quantification and trait extraction of recent pollen.



https://doi.org/10.1111/nph.16882
Dutz, Silvio; Stang, Anton; Wöckel, Lucas; Kosch, Olaf; Vogel, Patrick; Behr, Volker Christian; Wiekhorst, Frank
A dynamic bolus phantom for the evaluation of the spatio-temporal resolution of MPI scanners. - In: Journal of magnetism and magnetic materials, ISSN 1873-4766, Bd. 519 (2021), 167446

Magnetic particle imaging (MPI) is a tomographic imaging method to determine the spatial distribution of magnetic nanoparticles (MNP) within a defined volume. To evaluate the spatio-temporal resolution of existing MPI scanners, enabling the consistent comparison of the performance of different scanner setups, we developed dynamic MPI measurement phantoms based on segmented flow. These segmented flow phantoms comprise a defined bolus of ferrofluid tracer material, which can be pumped through a tube system with defined velocities. Using a hydrophobic organic carrier oil, cylindrically shaped boluses of different diameter, length, and flow velocity can be emulated. Moving boluses were imaged by different MPI scanner types and the correlation of spatial resolution und velocity of the bolus was investigated. For all bolus dimension and flow velocity combinations investigated, we observed a decreasing spatial resolution and increasing blurring for increasing bolus velocity and decreasing bolus volume.



https://doi.org/10.1016/j.jmmm.2020.167446
Häfeli, Urs; Dutz, Silvio; Zborowski, Maciej; Schütt, Wolfgang
Preface magnetic carriers conference 2018. - In: Journal of magnetism and magnetic materials, ISSN 1873-4766, Bd. 494 (2020), 165748

https://doi.org/10.1016/j.jmmm.2019.165748
Boho, David; Rzanny, Michael Carsten; Wäldchen, Jana; Nitsche, Fabian; Deggelmann, Alice; Wittich, Hans Christian; Seeland, Marco; Mäder, Patrick
Flora Capture: a citizen science application for collecting structured plant observations. - In: BMC bioinformatics, ISSN 1471-2105, Bd. 21 (2020), 576, insges. 11 S.

Digital plant images are becoming increasingly important. First, given a large number of images deep learning algorithms can be trained to automatically identify plants. Second, structured image-based observations provide information about plant morphological characteristics. Finally in the course of digitalization, digital plant collections receive more and more interest in schools and universities.



https://doi.org/10.1186/s12859-020-03920-9
Warsito, Indhika Fauzhan; Hunold, Alexander; Haueisen, Jens; Supriyanto, Eko
Performance evaluation of capacitive based force sensor for electroencephalography head caps. - In: International journal on robotics, automation and sciences, ISSN 2682-860X, Bd. 2 (2020), S. 4-8

https://doi.org/10.33093/ijoras.2020.2.1
Dölker, Eva-Maria; Lau, Stephan; Gröllich, Daniel; Haase, Elke; Krzywinski, Sybille; Schmauder, Martin; Haueisen, Jens
Methods for the determination of parameters for the electrical warning of persons :
Techniken zur Bestimmung von Parametern für die elektrische Personenwarnung. - In: Arbeitsmedizin, Sozialmedizin, Umweltmedizin, ISSN 0944-6052, Bd. 55 (2020), 10, S. 645-652

Hunold, Alexander; Machts, René; Haueisen, Jens
Head phantoms for bioelectromagnetic applications: a material study. - In: Biomedical engineering online, ISSN 1475-925X, Bd. 19 (2020), 87, S. 1-14

Assessments of source reconstruction procedures in electroencephalography and computations of transcranial electrical stimulation profiles require verification and validation with the help of ground truth configurations as implemented by physical head phantoms. For these phantoms, synthetic materials are needed, which are mechanically and electrochemically stable and possess conductivity values similar to the modeled human head tissues. Three-compartment head models comprise a scalp layer with a conductivity range of 0.137 S/m to 2.1 S/m, a skull layer with conductivity values between 0.066 S/m and 0.00275 S/m, and an intracranial volume with an often-used average conductivity value of 0.33 S/m. To establish a realistically shaped physical head phantom with a well-defined volume conduction configuration, we here characterize the electrical conductivity of synthetic materials for modeling head compartments. We analyzed agarose hydrogel, gypsum, and sodium chloride (NaCl) solution as surrogate materials for scalp, skull, and intracranial volume. We measured the impedance of all materials when immersed in NaCl solution using a four-electrode setup. The measured impedance values were used to calculate the electrical conductivity values of each material. Further, the conductivities in the longitudinal and transverse directions of reed sticks immersed in NaCl solution were measured to test their suitability for mimicking the anisotropic conductivity of white matter tracts.



https://doi.org/10.1186/s12938-020-00830-y
Reichel, Victoria Eleonore; Matuszak, Jasmin; Bente, Klaas; Heil, Tobias; Kraupner, Alexander; Dutz, Silvio; Cicha, Iwona; Faivre, Damien
Magnetite-arginine nanoparticles as a multifunctional biomedical tool. - In: Nanomaterials, ISSN 2079-4991, Bd. 10 (2020), 10, 2014, insges. 14 S.

Iron oxide nanoparticles are a promising platform for biomedical applications, both in terms of diagnostics and therapeutics. In addition, arginine-rich polypeptides are known to penetrate across cell membranes. Here, we thus introduce a system based on magnetite nanoparticles and the polypeptide poly-l-arginine (polyR-Fe3O4). We show that the hybrid nanoparticles exhibit a low cytotoxicity that is comparable to Resovist®, a commercially available drug. PolyR-Fe3O4 particles perform very well in diagnostic applications, such as magnetic particle imaging (1.7 and 1.35 higher signal respectively for the 3rd and 11th harmonic when compared to Resovist®), or as contrast agents for magnetic resonance imaging (R2/R1 ratio of 17 as compared to 11 at 0.94 T for Resovist®). Moreover, these novel particles can also be used for therapeutic purposes such as hyperthermia, achieving a specific heating power ratio of 208 W/g as compared to 83 W/g for Feridex®, another commercially available product. Therefore, we envision such materials to play a role in the future theranostic applications, where the arginine ability to deliver cargo into the cell can be coupled to the magnetite imaging properties and cancer fighting activity.



https://doi.org/10.3390/nano10102014